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@@ -1,810 +1,820 @@
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-<?php
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- global $options;
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- global $preamble;
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- global $sloppy_begin;
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- global $sloppy_end;
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- $preamble = "";
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- global $kpsefiles;
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- $kpsefiles = [];
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- global $ignore_packages;
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- $ignore_packages = [];
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- global $existing_mathops;
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- $existing_mathops = [];
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- global $tikzlibs;
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- $tikzlibs = [];
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- global $included_usepackages;
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- $included_usepackages = [];
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- global $additional_usepackages;
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- $additional_usepackages = [];
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- $steps = 10;
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- function user_consent($msg,$defaultyes = null,$defaultno = null)
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- {
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- global $options;
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- if ($defaultyes !== null && isset($options[$defaultyes]))
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- return true;
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- if ($defaultno !== null && isset($options[$defaultno]))
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- return false;
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- if (isset($options["-n"]))
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- return false;
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- $response = false;
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- do
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- {
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- echo "$msg (y/n)\n";
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- $response = rtrim(fgets(STDIN));
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- if ($response === "n" || $response == "N")
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- return false;
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- } while ($response !== "y" && $response !== "Y" && $response !== "");
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- return true;
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- }
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- function user_prompt($msg,$default)
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- {
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- global $options;
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- echo "$msg [Default: $default]\n";
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- $response = "";
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- if (!isset($options["-n"]))
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- $response = rtrim(fgets(STDIN));
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- if ($response == "")
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- $response = $default;
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- echo "You entered: '$response'\n";
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- return $response;
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- }
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- function print_help()
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- {
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- $name = basename(__FILE__);
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- echo<<<END
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-Usage: php $name /path/folder1/main.tex /path/folder2/article.tex ... /path/folderN/paper.tex\n
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-Generate a thesis template from the provided paper tex files and folders.
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-You can also provide pdf files instead of tex files or a mix of both.
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-The absolute minimum for a cumulative thesis is currently 3 papers first-authored and 6 in total.
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-
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---force-overwrite overwrite files and folders
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---no-overwrite do not overwrite files and folders
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---no-compile-check do not perform a compile check
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---use-backups restore backups before making changes
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---no-cover do not generate book cover pdf files
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---compile run latexmk on the resulting main.tex of your generated thesis
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---not-sloppy disable use of sloppypar around places that struggle without
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- (mainly the bibliographies)
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---cv add a CV
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- (unusual for PhD theses, required for habilitation theses)
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---no-stat-declaration do not add the statutory declaration
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- (required for PhD thesis, unusual for habilitation theses)
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--n skip all prompts (implies --no-overwrite)
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---help display this help and exit
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-END;
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- exit(0);
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- }
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- function error_exit($msg,$usage = false)
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- {
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- echo "ERROR: $msg\n";
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- if ($usage)
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- echo "Usage: php ".basename(__FILE__)." /path/folder1/main.tex /path/folder2/article.tex ... /path/folderN/paper.tex\n";
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- exit(-1);
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- }
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- function check_software()
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- {
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- if (strpos(shell_exec("latexmk --version"),"Latexmk,") === false)
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- error_exit("latexmk not installed");
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- if (!str_starts_with(shell_exec("pdftotext --help 2>&1"),"pdftotext version"))
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- error_exit("pdftotext not installed");
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- }
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- function rrmdir($dir) {
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- if (is_dir($dir)) {
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- $files = scandir($dir);
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- foreach ($files as $file)
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- if ($file != "." && $file != "..") rrmdir("$dir/$file");
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- rmdir($dir);
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- }
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- else if (file_exists($dir)) unlink($dir);
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- }
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- function rcopy($src, $dst) {
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- if (file_exists($dst)) rrmdir($dst);
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- if (is_dir($src)) {
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- mkdir($dst);
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- $files = scandir($src);
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- foreach ($files as $file)
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- if ($file != "." && $file != "..") rcopy("$src/$file", "$dst/$file");
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- }
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- else if (file_exists($src)) copy($src, $dst);
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- }
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- function rscandir($dir,$extensions = []) {
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- $result = [];
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- if (!str_ends_with($dir,"/"))
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- $dir .= "/";
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- if (str_ends_with($dir,"latex.out/"))
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- return $result;
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- $array = scandir($dir);
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- foreach ($array as $item) {
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- if (!str_starts_with($item,"."))
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- {
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- if (!is_dir($dir.$item))
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- {
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- $extension_match = true;
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- if ($extensions != [])
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- {
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- $extension_match = false;
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- foreach ($extensions as $e)
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- {
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- if (str_ends_with($item,"$e"))
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- {
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- $extension_match = true;
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- }
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- }
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- }
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- if ($extension_match)
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- $result[] = $dir.$item;
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- }
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- else
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- $result = array_merge($result, rscandir($dir.$item,$extensions));
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- }
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- }
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- return $result;
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- }
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- function unique_targets($targets)
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- {
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- $parts_required = 1;
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- $unique_targets = [];
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- while (count($unique_targets) != count($targets))
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- {
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- foreach ($targets as $t)
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- {
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- $tparts = explode("/",$t);
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- $tpcount = count($tparts);
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- $tparts = array_splice($tparts,$tpcount-$parts_required,$parts_required);
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- $t = implode("_",$tparts);
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- if (isset($unique_targets[$t]))
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- {
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- $parts_required++;
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- $unique_targets = [];
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- break;
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- }
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- $unique_targets[$t] = 1;
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- }
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- }
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- return array_keys($unique_targets);
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- }
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- function check_folders($argv)
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- {
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- $args = array_slice($argv,1);
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- $sourcedirs = [];
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- foreach ($args as $a)
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- {
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- if (!str_starts_with($a,"-"))
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- $sourcedirs[] = $a;
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- }
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- if (count($sourcedirs) < 1)
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- {
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- error_exit("Too few papers. Need at least one paper to run this.",true);
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- }
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- if (count($sourcedirs) < 3)
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- {
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- echo "Warning: Too few papers. The statutes require as an absolute minimum for a cumulative thesis at least 3 first-author papers and at least 6 in total.";
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- }
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- if (count($sourcedirs) < 5)
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- {
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- echo "Warning: Few papers. Check your institute guidelines to see how many papers are recommended. Also the statutes require as an absolute minimum for a cumulative thesis at least 6 papers in total.";
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- }
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- $texfiles = [];
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- for ($i = 0; $i < count($sourcedirs); $i++)
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- {
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- $texfiles[$i] = basename($sourcedirs[$i]);
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- $sourcedirs[$i] = dirname($sourcedirs[$i]);
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- }
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- $targets = unique_targets($sourcedirs);
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- return [$targets,$texfiles,$sourcedirs];
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- }
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- function check_and_copy_folders($argv)
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- {
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- [$targets,$texfiles,$sourcedirs] = check_folders($argv);
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- //echo "Source -> Target Directory Mapping:\n";
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- $n = count($sourcedirs);
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- //print_r($mapping);
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- for ($i = 0; $i < $n; $i++)
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- {
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- $s = $sourcedirs[$i];
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- $t = $targets[$i];
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- $f = $texfiles[$i];
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- if (str_ends_with($f,".pdf"))
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- {
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- if (!file_exists("$s/$f"))
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- error_exit("$s/$f not found");
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- if (file_exists("$t/$f.pdf") && !user_consent("$t/$f.pdf already exists... overwrite?","--force-overwrite","--no-overwrite"))
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- {
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- echo "Skipping $s/$f, $t/$f.pdf already exists...\n";
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- }
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- else
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- {
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- echo "Copying $s/$f to $t/$f...\n";
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- if (!file_exists($t)) mkdir($t);
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- rcopy("$s/$f","$t/$f");
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- }
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- }
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- else
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- {
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- if (!file_exists($s))
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- error_exit("$s not found");
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- if (file_exists($t) && !user_consent("$t already exists... overwrite?","--force-overwrite","--no-overwrite"))
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- {
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- echo "Skipping ".$s.", ".$t." already exists...\n";
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- }
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- else
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- {
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- echo "Copying ".$s." to ".$t."...\n";
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- rcopy($s,$t);
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- }
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- }
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- }
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- return array_combine($targets,$texfiles);
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- }
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- function file_get_and_backup($f,$bak = ".orig_bak")
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- {
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- global $options;
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- if (isset($options["--use-backups"]))
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- {
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- if (file_exists("$f$bak"))
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- copy("$f$bak", $f);
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- }
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- $content = file_get_contents("$f");
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- if (!file_exists("$f$bak"))
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- file_put_contents("$f$bak",$content);
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- return $content;
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- }
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- function adjust_references($papers,$extensions = [])
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- {
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- $bibresources = [];
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- foreach ($papers as $d => $f)
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- {
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- if (str_ends_with($f,".pdf"))
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- continue;
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- $files = rscandir($d,$extensions);
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- foreach ($files as $file)
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- {
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- if (str_ends_with($file,".bib"))
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- {
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- $bib = file_get_and_backup($file);
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- $bib = preg_replace("/(^\s*@\s*[a-z]+\s*\{\s*)((?!$d)\S)/i",'${1}'.$d.':${2}',$bib);
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- $bib = preg_replace("/(\n\s*@\s*[a-z]+\s*\{\s*)((?!$d)\S)/i",'${1}'.$d.':${2}',$bib);
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- $bib = preg_replace("/([\{\"].*)[^\\\\]#(.*)/i",'${1}\#${2}',$bib);
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- $bib = str_replace('{\i}','{i}',$bib);
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- $bib = str_replace('$\textregistered$','\textregistered',$bib);
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- $bib = str_replace('{$\textquoteright$}','\'',$bib);
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- file_put_contents($file,$bib);
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- $bibresources[$d] = $file;
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- }
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- else
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- {
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- $tex = file_get_and_backup($file);
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- // labels of lstlistings etc
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- $tex = preg_replace("/(lstlisting.*[\[,]\s*label\s*=\s*)((?!$d)[^\[,]+[\[,])/i",'${1}'.$d.':${2}',$tex);
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- // normal labels
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- $tex = preg_replace("/(\\\label\s*\{\s*)((?!$d)[^}]+\})/i",'${1}'.$d.':${2}',$tex);
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- // cref ref autoref
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- $refs = [];
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- preg_match_all("/\\\(cref|ref|autoref)\s*\{\s*[^}]+\}/i",$tex,$refs);
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- foreach ($refs[0] as $ref)
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- {
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- $oldref = $ref;
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- $ref = preg_replace("/([{,])\s*((?!$d)[^,}]+[},])/i",'${1}'.$d.':${2}',$ref);
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- $ref = preg_replace("/([{,])\s*((?!$d)[^,}]+[},])/i",'${1}'.$d.':${2}',$ref);
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- $tex = str_replace($oldref,$ref,$tex);
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- }
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- // cite citeA citeauthor etc
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- $cites = [];
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- preg_match_all("/\\\([a-z]*cite[a-z]*)\s*\{\s*[^}]+\}/i",$tex,$cites);
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- foreach ($cites[0] as $cite)
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- {
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- $oldcite = $cite;
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- $cite = preg_replace("/([{,])\s*((?!$d)[^,}]+[},])/i",'${1}'.$d.':${2}',$cite);
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- $cite = preg_replace("/([{,])\s*((?!$d)[^,}]+[},])/i",'${1}'.$d.':${2}',$cite);
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- $tex = str_replace($oldcite,$cite,$tex);
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- }
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- file_put_contents($file,$tex);
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- }
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- }
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- }
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- return $bibresources;
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- }
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- function handle_appendix($tex)
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- {
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- $appendix = false;
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- $lines = explode("\n",$tex);
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- for ($i = 0; $i < count($lines); $i++)
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- {
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- if ($appendix)
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- {
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- $lines[$i] = str_replace(['\subsubsection','\subsection','\section'],['\paragraph','\subsubsection','\subsection'],$lines[$i]);
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- }
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- if (str_starts_with($lines[$i],'\appendices') || str_starts_with($lines[$i],'\appendix'))
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- {
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- $lines[$i] = '\section{Appendix}';
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- $appendix = true;
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- }
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- }
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- $tex = implode("\n",$lines);
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- return $tex;
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- }
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- function stripformatting($tex)
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- {
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- return str_ireplace(['\Large ','\bf ','\rm ','\\\\'],[' ',' ',' ',' '],$tex);
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- }
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- function getusepackages($tex)
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- {
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- $packages = [];
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- preg_match_all("/\n\s*(\\\\usepackage([^{}]*)(?<R>{((?:[^{}]+|(?&R))*)}))/i",$tex,$packages);
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- if (isset($packages[1]))
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- {
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- return [$packages[1],$packages[4]];
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- }
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- return [[],[]];
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- }
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- function getmathops($tex)
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- {
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- $mathops = [];
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- preg_match_all("/\n\s*(\\\\DeclareMath(Operator|Alphabet)\\*?((?<R>{((?:[^{}]+|(?&R))*)})([^{}]*)|\\\\[^\{]*)(?<P>{((?:[^{}]+|(?&P))*)})(?<Q>{((?:[^{}]+|(?&Q))*)})?(?<S>{((?:[^{}]+|(?&S))*)})?(?<T>{((?:[^{}]+|(?&T))*)})?)/i",$tex,$mathops);
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- if (isset($mathops[4]))
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- return [$mathops[1],$mathops[3]];
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- return [[],[]];
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- }
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- function gettikzlibs($tex)
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- {
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- preg_match_all("/\\\\usetikzlibrary\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex,$matches);
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- if (isset($matches[2]))
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- return [$matches[0],$matches[2]];
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- else
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- return [[],[]];
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- }
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- function flatten($d,$f)
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- {
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- global $kpsefiles;
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- $tex = file_get_and_backup("$d/$f",".interm_bak");
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- preg_match_all("/\\n([^%]*?)(\\\\(input|include|usepackage)\s*\\\\*?\s*(?<R>{(?<RR>((?:[^{}]+|(?&R))*))}))/i",$tex,$inputs);
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- $files = [];
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- global $ignore_packages;
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- if (count($inputs) > 0)
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- {
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- for ($i = 0; $i < count($inputs[0]); $i++)
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- {
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- $exts = ['.tex'];
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- $f2 = $inputs['RR'][$i];
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- if (strtolower($inputs[3][$i]) === 'usepackage')
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- {
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- if (strpos($f2,",") !== false || in_array($f2,$ignore_packages) || in_array("$f2.sty",$kpsefiles))
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- continue;
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- $f2 .= ".sty";
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- }
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- while (!file_exists("$d/$f2") && count($exts) > 0)
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- $f2 = $inputs['RR'][$i].array_shift($exts);
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- if (file_exists("$d/$f2"))
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- $files[] = [$d,$f2,$inputs[2][$i]];
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- }
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- }
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|
- preg_match_all("/\\n([^%]*?)(\\\\(import|subimport)\s*\\\\*?\s*(?<R>{(?<RR>((?:[^{}]+|(?&R))*))})\s*(?<Q>{(?<QQ>((?:[^{}]+|(?&Q))*))}))/i",$tex,$inputs);
|
|
|
- if (count($inputs) > 0)
|
|
|
- {
|
|
|
- for ($i = 0; $i < count($inputs[0]); $i++)
|
|
|
- {
|
|
|
- $exts = ['.tex'];
|
|
|
- $f2 = $inputs['QQ'][$i].'/'.$inputs['RR'][$i];
|
|
|
- while (!file_exists("$d/$f2") && count($exts) > 0)
|
|
|
- $f2 = $inputs['QQ'][$i].'/'.$inputs['RR'][$i].array_shift($exts);
|
|
|
- if (!file_exists("$d/$f2"))
|
|
|
- $files[] = [$d,$f2,$inputs[2][$i]];
|
|
|
- }
|
|
|
- }
|
|
|
- foreach ($files as $file)
|
|
|
- {
|
|
|
- $content = flatten($file[0],$file[1]);
|
|
|
- $tex = str_replace($file[2],$content,$tex);
|
|
|
- }
|
|
|
- file_put_contents("$d/$f",$tex);
|
|
|
- return $tex;
|
|
|
- }
|
|
|
- function adjust_papers($papers)
|
|
|
- {
|
|
|
- $tex = "";
|
|
|
- $paper_fulltitle = "";
|
|
|
- $authors = "";
|
|
|
- $institute = "";
|
|
|
- $header = "";
|
|
|
- foreach ($papers as $d => $f)
|
|
|
- {
|
|
|
- if (str_ends_with($f,".pdf"))
|
|
|
- {
|
|
|
- $paper_fulltitle = trim(user_prompt("Please enter the full title for the paper in folder '$d'","TODO"));
|
|
|
- $paper_shorttitle = trim(user_prompt("Please enter a short title for the paper in folder '$d'","TODO"));
|
|
|
- $authors = trim(user_prompt("Please enter the author list for paper '$d'","TODO"));
|
|
|
- $header=<<<END
|
|
|
-\chapter[$paper_shorttitle]{{$paper_fulltitle}}\label{chapter:$d}
|
|
|
-\section*{Publication Data}
|
|
|
-\\fullcite{TODO}
|
|
|
-
|
|
|
-\section*{Contributions}
|
|
|
-TODO
|
|
|
-
|
|
|
-\includepdf[pages=-]{{$d}/{$f}}
|
|
|
-END;
|
|
|
-file_put_contents("$d/main.tex",$header);
|
|
|
- continue;
|
|
|
- }
|
|
|
- $file = "$d/$f";
|
|
|
- $authors = "";
|
|
|
- $institute = "";
|
|
|
- $title = "";
|
|
|
- $paper_fulltitle = "";
|
|
|
- $paper_shorttitle = "";
|
|
|
- $tex = file_get_and_backup($file,".interm_bak");
|
|
|
- if ($authors == "" && preg_match("/\n\s*\\\\author\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex) == 1)
|
|
|
- {
|
|
|
- preg_match_all("/\n\s*\\\\author\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex,$authors);
|
|
|
- if (isset($authors[2]))
|
|
|
- $authors = trim(stripformatting(implode(" ",$authors[2])));
|
|
|
- }
|
|
|
- if ($institute == "" && preg_match("/\n\s*\\\\institute\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex) == 1)
|
|
|
- {
|
|
|
- preg_match_all("/\n\s*\\\\institute\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex,$institute);
|
|
|
- if (isset($institute[2]) && isset($institute[2][0]))
|
|
|
- $institute = trim(stripformatting($institute[2][0]));
|
|
|
- }
|
|
|
- if ($paper_shorttitle == "" && preg_match("/\n\s*\\\\title\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex) == 1)
|
|
|
- {
|
|
|
- preg_match_all("/\n\s*\\\\title\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex,$title);
|
|
|
- if (isset($title[2]) && isset($title[2][0]))
|
|
|
- $title = trim(stripformatting($title[2][0]));
|
|
|
- else
|
|
|
- $title = $d;
|
|
|
-
|
|
|
- $shorttitle = $title;
|
|
|
- if (strpos($title,":") !== false)
|
|
|
- $shorttitle = trim(explode(":",$title)[0]);
|
|
|
- $paper_fulltitle = trim(user_prompt("Please enter the full title for the paper in folder '$d'","$title"));
|
|
|
- $paper_shorttitle = trim(user_prompt("Please enter a short title for the paper in folder '$d'","$shorttitle"));
|
|
|
- }
|
|
|
- if ($paper_fulltitle != "" && $paper_shorttitle != "" && $authors != "")
|
|
|
- {
|
|
|
- $header=<<<END
|
|
|
-\chapter[$paper_shorttitle]{{$paper_fulltitle}}\label{chapter:$d}
|
|
|
-\section*{Publication Data}
|
|
|
-\\fullcite{TODO}
|
|
|
-
|
|
|
-\section*{Contributions}
|
|
|
-TODO
|
|
|
-
|
|
|
-
|
|
|
-\\newpage
|
|
|
-\begin{center}
|
|
|
-{\Large \bfseries
|
|
|
-
|
|
|
-$paper_fulltitle
|
|
|
-}\\vspace{0.6cm}
|
|
|
-{\large $authors%
|
|
|
-} % TODO: check author list
|
|
|
-{\large $institute%
|
|
|
-} % TODO: check institutes
|
|
|
-\\end{center}
|
|
|
-END;
|
|
|
- }
|
|
|
-
|
|
|
- [$mathopsfull,$mathops] = getmathops($tex);
|
|
|
- global $existing_mathops;
|
|
|
- global $preamble;
|
|
|
- $addmathops = array_diff($mathops,$existing_mathops);
|
|
|
- $existing_mathops = array_unique($existing_mathops);
|
|
|
- $addmathops = array_unique($addmathops);
|
|
|
- foreach ($addmathops as $k => $v)
|
|
|
- {
|
|
|
- $preamble .= $mathopsfull[$k] . "\n";
|
|
|
- $existing_mathops[] = $v;
|
|
|
- }
|
|
|
-
|
|
|
- global $tikzlibs;
|
|
|
- [$foundlibsfull,$foundlibs] = gettikzlibs($tex);
|
|
|
- $addlibs = array_diff($foundlibs,$tikzlibs);
|
|
|
- $tikzlibs = array_unique($tikzlibs);
|
|
|
- $addlibs = array_unique($addlibs);
|
|
|
- foreach ($addlibs as $k => $v)
|
|
|
- {
|
|
|
- $preamble .= $foundlibsfull[$k] . "\n";
|
|
|
- $tikzlibs[] = $v;
|
|
|
- }
|
|
|
-
|
|
|
-
|
|
|
- $tex = preg_replace("/\\\documentclass.*\\n/i","
|
|
|
-",$tex);
|
|
|
- if (preg_match("/\\\begin{document}/i",$tex) == 1)
|
|
|
- {
|
|
|
- $tex = preg_replace("/\\\begin{document}/i",$header,$tex);
|
|
|
- $header = "";
|
|
|
- }
|
|
|
- $tex = preg_replace("/\\\begin{abstract}/i",'\section*{Abstract}',$tex);
|
|
|
- $tex = preg_replace("/\\\\newcommand/i",'\declarecommand',$tex);
|
|
|
- $tex = preg_replace("/\\\\renewcommand/i",'\declarecommand',$tex);
|
|
|
- $tex = preg_replace("/\\\\DeclareRobustCommand\s*(?<R>{((?:[^{}]+|(?&R))*)})\s*(?<Q>{((?:[^{}]+|(?&Q))*)})/i",'\declarecommand',$tex);
|
|
|
- $tex = preg_replace("/\\\\newenvironment/i",'\declareenvironment',$tex);
|
|
|
- $tex = preg_replace("/\\\\renewenvironment/i",'\declareenvironment',$tex);
|
|
|
- $tex = preg_replace("/\\\\NewDocumentEnvironment/i",'\DeclareDocumentEnvironment',$tex);
|
|
|
- $tex = preg_replace("/\\\\ReNewDocumentEnvironment/i",'\DeclareDocumentEnvironment',$tex);
|
|
|
- $tex = preg_replace("/\\\\end{abstract}/i",'',$tex);
|
|
|
- $tex = preg_replace("/\\\\onecolumn/i",'',$tex);
|
|
|
- $tex = preg_replace("/\\\\pagenumbering\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\special\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\DeclareMathOperator/i",'%$0',$tex);
|
|
|
- $tex = preg_replace("/\\\\DeclareMathAlphabet/i",'%$0',$tex);
|
|
|
- $tex = preg_replace("/\\\\usepackage[cache=false]{minted}/i",'\usepackage{minted}',$tex);
|
|
|
- $tex = preg_replace("/\\\\thispagestyle{empty}/i",'%$0',$tex);
|
|
|
- $tex = preg_replace("/\\\\PassOptionsToPackage\s*(?<R>{((?:[^{}]+|(?&R))*)})(?<Q>{((?:[^{}]+|(?&Q))*)})/i",'',$tex);
|
|
|
- $tex = preg_replace("/(\\\\csvautobooktabular\s*([^{}]*)\s*)(?<R>{((?:[^{}]+|(?&R))*)})/i","\\1{{$d}/\\4}",$tex);
|
|
|
- $tex = preg_replace("/\\\\bibliographystyle\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",'%$0',$tex);
|
|
|
- $tex = preg_replace("/\\\\usetikzlibrary\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",'%$0',$tex);
|
|
|
- $tex = preg_replace("/\\\\DeclareFloatFont\s*(?<R>{((?:[^{}]+|(?&R))*)})(?<Q>{((?:[^{}]+|(?&Q))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\captionsetup\s*(?<R>\[((?:[^\[\]]+|(?&R))*)\])?(?<Q>{((?:[^{}]+|(?&Q))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\RequirePackage\s*(?<R>\[((?:[^\[\]]+|(?&R))*)\])?(?<Q>{((?:[^{}]+|(?&Q))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\tikzexternalize\s*(?<R>\[((?:[^\[\]]+|(?&R))*)\])/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\floatsetup\s*(?<R>\[((?:[^\[\]]+|(?&R))*)\])(?<Q>{((?:[^{}]+|(?&Q))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\newfloat\s*(?<R>{((?:[^{}]+|(?&R))*)})(?<Q>{((?:[^{}]+|(?&Q))*)})(?<P>{((?:[^{}]+|(?&P))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\s*\\\\bibliography\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","\n".'\begin{sloppypar}
|
|
|
-\printbibliography[title={References}, heading=subbibliography]
|
|
|
-\end{sloppypar}',$tex);
|
|
|
- $tex = preg_replace("/\\\\end{document}/i",'',$tex);
|
|
|
- $tex = preg_replace("/\n\s*\\\\author\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\tag\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\n\s*\\\\authorrunning\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\n\s*\\\\institute\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\n\s*\\\\title\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\n\s*\\\\date\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\includegraphics\s*(?<R>\[((?:[^\[\]]+|(?&R))*)\])(?<Q>{((?:[^{}]+|(?&Q))*)})/i",'\includegraphics${1}{'.$d.'/${4}}',$tex);
|
|
|
- if (preg_match("/\\\\maketitle/i",$tex) == 1)
|
|
|
- {
|
|
|
- $tex = preg_replace("/\\\\maketitle/i",$header,$tex);
|
|
|
- $header = "";
|
|
|
- }
|
|
|
- $tex = preg_replace("/\\\\IEEEoverridecommandlockouts/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\IEEEauthorblock[AN]/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\IEEEauthorrefmark/i","\\textsuperscript",$tex);
|
|
|
- $tex = preg_replace("/\\\\twocolumn/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\SetWatermarkText\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\ProvidesPackage\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\SetWatermarkScale\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\\\\SetWatermarkLightness\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/\n\s*\\\\tikzexternalize/i","",$tex);
|
|
|
- [$ups,$ps] = getusepackages($tex);
|
|
|
- global $ignore_packages;
|
|
|
- global $included_usepackages;
|
|
|
- global $additional_usepackages;
|
|
|
- foreach (array_diff($ps,$included_usepackages) as $k => $v) {
|
|
|
- if (in_array($v,['minted']))
|
|
|
- {
|
|
|
- $additional_usepackages[] = "\usepackage{minted}";
|
|
|
- $included_usepackages[] = $v;
|
|
|
- }
|
|
|
- else if (!in_array($v,$ignore_packages) && !($v == 'floatrow' && in_array('float',$included_usepackages)))
|
|
|
- {
|
|
|
- $additional_usepackages[] = $ups[$k];
|
|
|
- $included_usepackages[] = $v;
|
|
|
- }
|
|
|
- }
|
|
|
- array_unique($additional_usepackages);
|
|
|
- $tex = preg_replace("/\n\s*\\\\usepackage([^{}]*)(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
- $tex = preg_replace("/^\s*\\\\usepackage([^{}]*)(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
-
|
|
|
- $tex = preg_replace("/\n\s*\\\\setlength{\s*\\\marginparwidth.*\n/i","\n",$tex);
|
|
|
-
|
|
|
- if (stripos($tex,"\appendices") !== false || stripos($tex,"\appendix") !== false)
|
|
|
- $tex = handle_appendix($tex);
|
|
|
- if (!str_starts_with($tex,"\\makeatletter\n\def\\relativepath{\\import@path}\n\\makeatother\n"))
|
|
|
- $tex = "\\makeatletter\n\def\\relativepath{\\import@path}\n\\makeatother\n" . $tex;
|
|
|
- $tex .= "\n\graphicspath{}";
|
|
|
- file_put_contents($file,$tex);
|
|
|
- }
|
|
|
- return;
|
|
|
- }
|
|
|
- function check_options($argv)
|
|
|
- {
|
|
|
- $options = [];
|
|
|
- foreach ($argv as $a)
|
|
|
- {
|
|
|
- if (str_starts_with($a,"-"))
|
|
|
- $options[$a] = 1;
|
|
|
- }
|
|
|
- if (isset($options["-n"]) && !isset($options["--force-overwrite"]))
|
|
|
- $options["--no-overwrite"] = 1;
|
|
|
- return $options;
|
|
|
- }
|
|
|
- function compile_check($papers,$precopy = false)
|
|
|
- {
|
|
|
- //array_shift($papers); weird...
|
|
|
- if ($precopy)
|
|
|
- $papers = array_combine($papers,$papers);
|
|
|
- foreach ($papers as $p => $f)
|
|
|
- {
|
|
|
- if (str_ends_with($f,".pdf"))
|
|
|
- {
|
|
|
- echo "======= Skipping PDF: $f =======\n";
|
|
|
- continue;
|
|
|
- }
|
|
|
- echo "======= Paper $p -> $f START =======\n";
|
|
|
- if ($precopy)
|
|
|
- {
|
|
|
- echo "$p\n";
|
|
|
- if (strpos($p,"/") === false || str_starts_with($p,".") || !is_dir(dirname($p)))
|
|
|
- continue;
|
|
|
- $f = basename($p);
|
|
|
- $p = dirname($p);
|
|
|
- }
|
|
|
- else
|
|
|
- {
|
|
|
- shell_exec("cd $p; latexmk -c 2>/dev/null; latexmk -C 2>/dev/null; rm -f *.bbl");
|
|
|
- }
|
|
|
- $str = shell_exec("cd $p; latexmk -latexoption=\"-shell-escape\" -g -pdf $f 2>&1");
|
|
|
- $lines = explode("\n",$str);
|
|
|
- $skip = true;
|
|
|
- $failed = false;
|
|
|
- foreach($lines as $l)
|
|
|
- {
|
|
|
- if (str_starts_with($l,"Latexmk: ====List of undefined refs and citations:"))
|
|
|
- $skip = false;
|
|
|
- if ($skip)
|
|
|
- continue;
|
|
|
- if (stripos($l,"fail") !== false)
|
|
|
- $failed = true;
|
|
|
- echo "$l\n";
|
|
|
- }
|
|
|
- if ($failed || user_consent("Please check the PDF file. Are there any problems with invalid references to figures, tables or with the bibliography?","--","--no-overwrite"))
|
|
|
- error_exit("The paper did not compile properly, please fix the errors next before continuing.");
|
|
|
- echo "======= Paper $p -> $f END =======\n";
|
|
|
- }
|
|
|
- }
|
|
|
- function init_kpse()
|
|
|
- {
|
|
|
- global $kpsefiles;
|
|
|
- $kpsepath = shell_exec("kpsepath tex");
|
|
|
- $kpsepath = explode(":",$kpsepath);
|
|
|
- foreach ($kpsepath as $k)
|
|
|
- {
|
|
|
- $k = str_replace(["!!","\n","///","//"],["","","/","/"],$k);
|
|
|
- if (str_starts_with($k,"."))
|
|
|
- continue;
|
|
|
- $found = null;
|
|
|
- if (is_dir($k))
|
|
|
- $found = rscandir($k,[".sty"]);
|
|
|
- if ($found != null)
|
|
|
- {
|
|
|
- for ($i = 0; $i < count($found); $i++)
|
|
|
- $found[$i] = basename($found[$i]);
|
|
|
- $kpsefiles = array_unique(array_merge($kpsefiles,$found));
|
|
|
- }
|
|
|
- }
|
|
|
- sort($kpsefiles);
|
|
|
- }
|
|
|
- echo "\n=== Step 1/$steps: Check Software and Command Line Options ===\n\n";
|
|
|
- check_software();
|
|
|
- $options = check_options($argv);
|
|
|
- if (isset($options["--help"]))
|
|
|
- print_help();
|
|
|
-
|
|
|
- $sloppy_begin = "";
|
|
|
- $sloppy_end = "";
|
|
|
- if (!isset($options["--no-sloppy"]))
|
|
|
- {
|
|
|
- $sloppy_begin = '\begin{sloppypar}';
|
|
|
- $sloppy_end = '\end{sloppypar}';
|
|
|
- }
|
|
|
-
|
|
|
- echo "\n=== Step 2/$steps: Check Folders ===\n\n";
|
|
|
- [$targets,$texfiles,$sourcedirs] = check_folders($argv);
|
|
|
-
|
|
|
- echo "\n=== Step 3/$steps: Pre-Copy Compile Check ===\n\n";
|
|
|
- $targets_exist = true;
|
|
|
- foreach ($targets as $t)
|
|
|
- if (!is_dir($t))
|
|
|
- $targets_exist = false;
|
|
|
- if (isset($options["--no-compile-check"]) || $targets_exist)
|
|
|
- echo "Skipping...\n";
|
|
|
- else
|
|
|
- compile_check($argv,true);
|
|
|
- echo "\n=== Step 4/$steps: Copying Files ===\n\n";
|
|
|
- $papers = check_and_copy_folders($argv);
|
|
|
- echo "\n=== Step 5/$steps: Adjusting References (in *.bib *.tex *.tikz) ===\n\n";
|
|
|
- $bibresources = adjust_references($papers,[".bib",".tex",".tikz"]);
|
|
|
- echo "\n=== Step 6/$steps: Post-Copy Compile Check ===\n\n";
|
|
|
- if (isset($options["--no-compile-check"]))
|
|
|
- echo "Skipping...\n";
|
|
|
- else
|
|
|
- compile_check($papers);
|
|
|
- echo "\n=== Step 7/$steps: Initialize KPSE Database ===\n\n";
|
|
|
- init_kpse();
|
|
|
- global $ignore_packages;
|
|
|
- $ignore_packages = explode(",",user_prompt("Enter a comma-separated list of packages that should be considered ignored (e.g. publisher or conference styles, as well as packages that modify font or page formats)","usenix,epsfig,endnotes,flushend,mathptmx,pslatex,fontenc,microtype,draftwatermark,usenixbadges,cite,csvenhanced,etex,filecontents"));
|
|
|
- echo "\n=== Step 8/$steps: Flattening Papers ===\n\n";
|
|
|
- foreach ($papers as $d => $f)
|
|
|
- flatten($d,$f);
|
|
|
- echo "\n=== Step 9/$steps: Post-Flattening Compile Check ===\n\n";
|
|
|
- if (isset($options["--no-compile-check"]))
|
|
|
- echo "Skipping...\n";
|
|
|
- else
|
|
|
- compile_check($papers);
|
|
|
- echo "\n=== Step 10/$steps: Preparing Extraction of Used Packages, Tikz Libs, Math Ops etc. ===\n\n";
|
|
|
- [$_t,$usepackages1] = getusepackages(file_get_contents("main.tex.php"));
|
|
|
- [$_t,$usepackages2] = getusepackages(file_get_contents("tugraz_defaults.sty"));
|
|
|
- global $included_usepackages;
|
|
|
- $included_usepackages = array_unique(array_merge($usepackages1, $usepackages2));
|
|
|
- sort($included_usepackages);
|
|
|
-
|
|
|
- echo "\n=== Step 12/$steps: Adjusting Papers ===\n\n";
|
|
|
- adjust_papers($papers);
|
|
|
- foreach ($papers as $k => $v)
|
|
|
- {
|
|
|
- if (str_ends_with($papers[$k],".pdf"))
|
|
|
- $papers[$k] = 'main.tex';
|
|
|
- }
|
|
|
- echo "\n=== Step 12/$steps: Generate main.tex ===\n\n";
|
|
|
- $thesis_type = user_prompt("Enter Thesis Type ","PhD Thesis");
|
|
|
- $thesis_title = user_prompt("Enter Thesis Title ","Security of TODO");
|
|
|
- $thesis_part1_title = user_prompt("Enter Introductory Part Title ","Introduction to the Security of TODO");
|
|
|
- $thesis_author = user_prompt("Enter Your Name ","Harry Potter");
|
|
|
- $thesis_date = user_prompt("Enter Prospective Defense Month", "July 1998");
|
|
|
- $thesis_institute = user_prompt("Enter Your Institute","Institute for Applied Information Processing and Communications");
|
|
|
- $thesis_assessors = user_prompt("Enter Names of your Assessors (comma-separated)","Severus Snape, Minerva McGonagall");
|
|
|
- $num_publications_in_thesis = count($papers);
|
|
|
- $num_publications = user_prompt("How many publications did you co-author during your PhD? (6 is the absolute minimum for a cumulative thesis)","6");
|
|
|
-
|
|
|
- ob_start();
|
|
|
- require "main.tex.php";
|
|
|
- $maintex_content = ob_get_contents();
|
|
|
- ob_end_clean();
|
|
|
- if (!file_exists("main.tex") || user_consent("main.tex already exists. overwrite?"))
|
|
|
- file_put_contents("main.tex",$maintex_content);
|
|
|
-
|
|
|
- if (!file_exists("mypreamble.sty") || user_consent("mypreamble.sty already exists... overwrite?","--force-overwrite","--no-overwrite"))
|
|
|
- file_put_contents("mypreamble.sty","\ProvidesPackage{mypreamble}\n\n".implode("\n",array_unique($additional_usepackages))."\n\n".$preamble);
|
|
|
-
|
|
|
- @mkdir("tikz");
|
|
|
-
|
|
|
- if (!file_exists("abstract.tex"))
|
|
|
- file_put_contents("abstract.tex","");
|
|
|
- if (!file_exists("intro.tex"))
|
|
|
- file_put_contents("intro.tex","");
|
|
|
-
|
|
|
- if (!file_exists("main.bib"))
|
|
|
- file_put_contents("main.bib",'@inproceedings{Kocher2019,
|
|
|
- author = {Paul Kocher and Jann Horn and Anders Fogh and Daniel Genkin and Daniel Gruss and Werner Haas and Mike Hamburg and Moritz Lipp and Stefan Mangard and Thomas Prescher and Michael Schwarz and Yuval Yarom},
|
|
|
- booktitle = {S\&P},
|
|
|
- title = {{Spectre Attacks: Exploiting Speculative Execution}},
|
|
|
- year = {2019}
|
|
|
-}');
|
|
|
- if (isset($options["--cv"]))
|
|
|
- {
|
|
|
- if (!file_exists("cv.bib"))
|
|
|
- file_put_contents("cv.bib","");
|
|
|
- if (!file_exists("cv.tex"))
|
|
|
- file_put_contents("cv.tex","This is my CV! Thanks for checking it out!");
|
|
|
- }
|
|
|
-
|
|
|
- if (!isset($options["--no-cover"]))
|
|
|
- {
|
|
|
- ob_start();
|
|
|
- require "cover1.tex.php";
|
|
|
- $covertex_content = ob_get_contents();
|
|
|
- ob_end_clean();
|
|
|
- if (!file_exists("cover1.tex") || user_consent("cover1.tex already exists. overwrite?"))
|
|
|
- file_put_contents("cover1.tex",$covertex_content);
|
|
|
-
|
|
|
- shell_exec('latexmk -latexoption="-shell-escape" -g -pdf cover1.tex 1>/dev/null 2>/dev/null');
|
|
|
-
|
|
|
- ob_start();
|
|
|
- require "cover2.tex.php";
|
|
|
- $covertex_content = ob_get_contents();
|
|
|
- ob_end_clean();
|
|
|
- if (!file_exists("cover2.tex") || user_consent("cover2.tex already exists. overwrite?"))
|
|
|
- file_put_contents("cover2.tex",$covertex_content);
|
|
|
-
|
|
|
- shell_exec('latexmk -latexoption="-shell-escape" -g -pdf cover2.tex 1>/dev/null 2>/dev/null');
|
|
|
- }
|
|
|
- if (isset($options["--compile"]))
|
|
|
- {
|
|
|
- passthru('latexmk -latexoption="-shell-escape" -g -pdf main.tex');
|
|
|
- }
|
|
|
- else
|
|
|
- {
|
|
|
- echo "=== done ===\nNext step, run this command:\nlatexmk -latexoption=\"-shell-escape\" -g -pdf main.tex\n";
|
|
|
- }
|
|
|
+<?php
|
|
|
+ global $options;
|
|
|
+ $options = [];
|
|
|
+ global $preamble;
|
|
|
+ global $sloppy_begin;
|
|
|
+ global $sloppy_end;
|
|
|
+ $preamble = "";
|
|
|
+ global $kpsefiles;
|
|
|
+ $kpsefiles = [];
|
|
|
+ global $ignore_packages;
|
|
|
+ $ignore_packages = [];
|
|
|
+ global $existing_mathops;
|
|
|
+ $existing_mathops = [];
|
|
|
+ global $tikzlibs;
|
|
|
+ $tikzlibs = [];
|
|
|
+ global $included_usepackages;
|
|
|
+ $included_usepackages = [];
|
|
|
+ global $additional_usepackages;
|
|
|
+ $additional_usepackages = [];
|
|
|
+ $steps = 10;
|
|
|
+ function user_consent($msg,$defaultyes = null,$defaultno = null)
|
|
|
+ {
|
|
|
+ global $options;
|
|
|
+ if ($defaultyes !== null && isset($options[$defaultyes]))
|
|
|
+ return true;
|
|
|
+ if ($defaultno !== null && isset($options[$defaultno]))
|
|
|
+ return false;
|
|
|
+ if (isset($options["-n"]))
|
|
|
+ return false;
|
|
|
+ $response = false;
|
|
|
+ do
|
|
|
+ {
|
|
|
+ echo "$msg (y/n)\n";
|
|
|
+ $response = rtrim(fgets(STDIN));
|
|
|
+ if ($response === "n" || $response == "N")
|
|
|
+ return false;
|
|
|
+ } while ($response !== "y" && $response !== "Y" && $response !== "");
|
|
|
+ return true;
|
|
|
+ }
|
|
|
+ function user_prompt($msg,$default)
|
|
|
+ {
|
|
|
+ global $options;
|
|
|
+ echo "$msg [Default: $default]\n";
|
|
|
+ $response = "";
|
|
|
+ if (!isset($options["-n"]))
|
|
|
+ $response = rtrim(fgets(STDIN));
|
|
|
+ if ($response == "")
|
|
|
+ $response = $default;
|
|
|
+ echo "You entered: '$response'\n";
|
|
|
+ return $response;
|
|
|
+ }
|
|
|
+ function print_help()
|
|
|
+ {
|
|
|
+ $name = basename(__FILE__);
|
|
|
+ echo<<<END
|
|
|
+Usage: php thesiscomposer.php /path/folder1/main.tex /path/folder2/article.tex ... /path/folderN/paper.tex\n
|
|
|
+Generate a thesis template from the provided paper tex files and folders.
|
|
|
+You can also provide pdf files instead of tex files or a mix of both.
|
|
|
+The absolute minimum for a cumulative thesis is currently 3 papers first-authored and 6 in total.
|
|
|
+
|
|
|
+--force-overwrite overwrite files and folders
|
|
|
+--no-overwrite do not overwrite files and folders
|
|
|
+--no-compile-check do not perform a compile check
|
|
|
+--use-backups restore backups before making changes
|
|
|
+--no-cover do not generate book cover pdf files
|
|
|
+--compile run latexmk on the resulting main.tex of your generated thesis
|
|
|
+--not-sloppy disable use of sloppypar around places that struggle without
|
|
|
+ (mainly the bibliographies)
|
|
|
+--cv add a CV
|
|
|
+ (unusual for PhD theses, required for habilitation theses)
|
|
|
+--no-stat-declaration do not add the statutory declaration
|
|
|
+ (required for PhD thesis, unusual for habilitation theses)
|
|
|
+-n skip all prompts (implies --no-overwrite)
|
|
|
+--help display this help and exit
|
|
|
+END;
|
|
|
+ exit(0);
|
|
|
+ }
|
|
|
+ function error_exit($msg,$usage = false)
|
|
|
+ {
|
|
|
+ echo "ERROR: $msg\n";
|
|
|
+ if ($usage)
|
|
|
+ echo "Usage: php ".basename(__FILE__)." /path/folder1/main.tex /path/folder2/article.tex ... /path/folderN/paper.tex\n";
|
|
|
+ exit(-1);
|
|
|
+ }
|
|
|
+ function check_software()
|
|
|
+ {
|
|
|
+ if (strpos(shell_exec("latexmk --version"),"Latexmk,") === false)
|
|
|
+ error_exit("latexmk not installed");
|
|
|
+ if (!str_starts_with(shell_exec("pdftotext --help 2>&1"),"pdftotext version"))
|
|
|
+ error_exit("pdftotext not installed");
|
|
|
+ }
|
|
|
+ function rrmdir($dir) {
|
|
|
+ if (is_dir($dir)) {
|
|
|
+ $files = scandir($dir);
|
|
|
+ foreach ($files as $file)
|
|
|
+ if ($file != "." && $file != "..") rrmdir("$dir/$file");
|
|
|
+ rmdir($dir);
|
|
|
+ }
|
|
|
+ else if (file_exists($dir)) unlink($dir);
|
|
|
+ }
|
|
|
+ function rcopy($src, $dst) {
|
|
|
+ if (file_exists($dst)) rrmdir($dst);
|
|
|
+ if (is_dir($src)) {
|
|
|
+ mkdir($dst);
|
|
|
+ $files = scandir($src);
|
|
|
+ foreach ($files as $file)
|
|
|
+ if ($file != "." && $file != "..") rcopy("$src/$file", "$dst/$file");
|
|
|
+ }
|
|
|
+ else if (file_exists($src)) copy($src, $dst);
|
|
|
+ }
|
|
|
+ function rscandir($dir,$extensions = []) {
|
|
|
+ $result = [];
|
|
|
+ if (!str_ends_with($dir,"/"))
|
|
|
+ $dir .= "/";
|
|
|
+ if (str_ends_with($dir,"latex.out/"))
|
|
|
+ return $result;
|
|
|
+ $array = scandir($dir);
|
|
|
+ foreach ($array as $item) {
|
|
|
+ if (!str_starts_with($item,"."))
|
|
|
+ {
|
|
|
+ if (!is_dir($dir.$item))
|
|
|
+ {
|
|
|
+ $extension_match = true;
|
|
|
+ if ($extensions != [])
|
|
|
+ {
|
|
|
+ $extension_match = false;
|
|
|
+ foreach ($extensions as $e)
|
|
|
+ {
|
|
|
+ if (str_ends_with($item,"$e"))
|
|
|
+ {
|
|
|
+ $extension_match = true;
|
|
|
+ }
|
|
|
+ }
|
|
|
+ }
|
|
|
+ if ($extension_match)
|
|
|
+ $result[] = $dir.$item;
|
|
|
+ }
|
|
|
+ else
|
|
|
+ $result = array_merge($result, rscandir($dir.$item,$extensions));
|
|
|
+ }
|
|
|
+ }
|
|
|
+ return $result;
|
|
|
+ }
|
|
|
+ function unique_targets($targets)
|
|
|
+ {
|
|
|
+ $parts_required = 1;
|
|
|
+ $unique_targets = [];
|
|
|
+ while (count($unique_targets) != count($targets))
|
|
|
+ {
|
|
|
+ foreach ($targets as $t)
|
|
|
+ {
|
|
|
+ $tparts = explode("/",$t);
|
|
|
+ $tpcount = count($tparts);
|
|
|
+ $tparts = array_splice($tparts,$tpcount-$parts_required,$parts_required);
|
|
|
+ $t = implode("_",$tparts);
|
|
|
+ if (isset($unique_targets[$t]))
|
|
|
+ {
|
|
|
+ $parts_required++;
|
|
|
+ $unique_targets = [];
|
|
|
+ break;
|
|
|
+ }
|
|
|
+ $unique_targets[$t] = 1;
|
|
|
+ }
|
|
|
+ }
|
|
|
+ return array_keys($unique_targets);
|
|
|
+ }
|
|
|
+ function check_folders($argv)
|
|
|
+ {
|
|
|
+ $sourcedirs = [];
|
|
|
+ foreach ($argv as $a)
|
|
|
+ {
|
|
|
+ if (!str_starts_with($a,"-"))
|
|
|
+ $sourcedirs[] = $a;
|
|
|
+ }
|
|
|
+ if (count($sourcedirs) < 1)
|
|
|
+ {
|
|
|
+ error_exit("Too few papers. Need at least one paper to run this.",true);
|
|
|
+ }
|
|
|
+ if (count($sourcedirs) < 3)
|
|
|
+ {
|
|
|
+ echo "Warning: Too few papers. The statutes require as an absolute minimum for a cumulative thesis at least 3 first-author papers and at least 6 in total.";
|
|
|
+ }
|
|
|
+ if (count($sourcedirs) < 5)
|
|
|
+ {
|
|
|
+ echo "Warning: Few papers. Check your institute guidelines to see how many papers are recommended. Also the statutes require as an absolute minimum for a cumulative thesis at least 6 papers in total.";
|
|
|
+ }
|
|
|
+ $texfiles = [];
|
|
|
+ for ($i = 0; $i < count($sourcedirs); $i++)
|
|
|
+ {
|
|
|
+ $texfiles[$i] = basename($sourcedirs[$i]);
|
|
|
+ $sourcedirs[$i] = dirname($sourcedirs[$i]);
|
|
|
+ }
|
|
|
+ $targets = unique_targets($sourcedirs);
|
|
|
+ return [$targets,$texfiles,$sourcedirs];
|
|
|
+ }
|
|
|
+ function check_and_copy_folders($argv)
|
|
|
+ {
|
|
|
+ [$targets,$texfiles,$sourcedirs] = check_folders($argv);
|
|
|
+ //echo "Source -> Target Directory Mapping:\n";
|
|
|
+ $n = count($sourcedirs);
|
|
|
+ //print_r($mapping);
|
|
|
+ for ($i = 0; $i < $n; $i++)
|
|
|
+ {
|
|
|
+ $s = $sourcedirs[$i];
|
|
|
+ $t = $targets[$i];
|
|
|
+ $f = $texfiles[$i];
|
|
|
+ if (str_ends_with($f,".pdf"))
|
|
|
+ {
|
|
|
+ if (!file_exists("$s/$f"))
|
|
|
+ error_exit("$s/$f not found");
|
|
|
+ if (file_exists("$t/$f.pdf") && !user_consent("$t/$f.pdf already exists... overwrite?","--force-overwrite","--no-overwrite"))
|
|
|
+ {
|
|
|
+ echo "Skipping $s/$f, $t/$f.pdf already exists...\n";
|
|
|
+ }
|
|
|
+ else
|
|
|
+ {
|
|
|
+ echo "Copying $s/$f to $t/$f...\n";
|
|
|
+ if (!file_exists($t)) mkdir($t);
|
|
|
+ rcopy("$s/$f","$t/$f");
|
|
|
+ }
|
|
|
+ }
|
|
|
+ else
|
|
|
+ {
|
|
|
+ if (!file_exists($s))
|
|
|
+ error_exit("$s not found");
|
|
|
+ if (file_exists($t) && !user_consent("$t already exists... overwrite?","--force-overwrite","--no-overwrite"))
|
|
|
+ {
|
|
|
+ echo "Skipping ".$s.", ".$t." already exists...\n";
|
|
|
+ }
|
|
|
+ else
|
|
|
+ {
|
|
|
+ echo "Copying ".$s." to ".$t."...\n";
|
|
|
+ rcopy($s,$t);
|
|
|
+ }
|
|
|
+ }
|
|
|
+ }
|
|
|
+ return array_combine($targets,$texfiles);
|
|
|
+ }
|
|
|
+ function file_get_and_backup($f,$bak = ".orig_bak")
|
|
|
+ {
|
|
|
+ global $options;
|
|
|
+ if (isset($options["--use-backups"]))
|
|
|
+ {
|
|
|
+ if (file_exists("$f$bak"))
|
|
|
+ copy("$f$bak", $f);
|
|
|
+ }
|
|
|
+ $content = file_get_contents("$f");
|
|
|
+ if (!file_exists("$f$bak"))
|
|
|
+ file_put_contents("$f$bak",$content);
|
|
|
+ return $content;
|
|
|
+ }
|
|
|
+ function adjust_references($papers,$extensions = [])
|
|
|
+ {
|
|
|
+ $bibresources = [];
|
|
|
+ foreach ($papers as $d => $f)
|
|
|
+ {
|
|
|
+ if (str_ends_with($f,".pdf"))
|
|
|
+ continue;
|
|
|
+ $files = rscandir($d,$extensions);
|
|
|
+ foreach ($files as $file)
|
|
|
+ {
|
|
|
+ if (str_ends_with($file,".bib"))
|
|
|
+ {
|
|
|
+ $bib = file_get_and_backup($file);
|
|
|
+ $bib = preg_replace("/(^\s*@\s*[a-z]+\s*\{\s*)((?!$d)\S)/i",'${1}'.$d.':${2}',$bib);
|
|
|
+ $bib = preg_replace("/(\n\s*@\s*[a-z]+\s*\{\s*)((?!$d)\S)/i",'${1}'.$d.':${2}',$bib);
|
|
|
+ $bib = preg_replace("/([\{\"].*)[^\\\\]#(.*)/i",'${1}\#${2}',$bib);
|
|
|
+ $bib = str_replace('{\i}','{i}',$bib);
|
|
|
+ $bib = str_replace('$\textregistered$','\textregistered',$bib);
|
|
|
+ $bib = str_replace('{$\textquoteright$}','\'',$bib);
|
|
|
+ file_put_contents($file,$bib);
|
|
|
+ $bibresources[$d] = $file;
|
|
|
+ }
|
|
|
+ else
|
|
|
+ {
|
|
|
+ $tex = file_get_and_backup($file);
|
|
|
+ // labels of lstlistings etc
|
|
|
+ $lstlistings = [];
|
|
|
+ preg_match_all("/\\\\begin{lstlisting}.*?\\\\end{lstlisting}/sim",$tex,$lstlistings);
|
|
|
+ if (count($lstlistings[0]) > 0)
|
|
|
+ foreach ($lstlistings[0] as $l)
|
|
|
+ {
|
|
|
+ $l2 = preg_replace("/(label\s*=\s*)(?!$d)/i",'${1}'.$d.':',$l);
|
|
|
+ $tex = str_replace($l,$l2,$tex);
|
|
|
+ }
|
|
|
+ // normal labels
|
|
|
+ $tex = preg_replace("/(\\\label\s*\{\s*)((?!$d)[^}]+\})/i",'${1}'.$d.':${2}',$tex);
|
|
|
+ // cref ref autoref
|
|
|
+ $refs = [];
|
|
|
+ preg_match_all("/\\\(cref|ref|autoref)\s*\{\s*[^}]+\}/i",$tex,$refs);
|
|
|
+ foreach ($refs[0] as $ref)
|
|
|
+ {
|
|
|
+ $oldref = $ref;
|
|
|
+ $ref = preg_replace("/([{,])\s*((?!$d)[^,}]+[},])/i",'${1}'.$d.':${2}',$ref);
|
|
|
+ $ref = preg_replace("/([{,])\s*((?!$d)[^,}]+[},])/i",'${1}'.$d.':${2}',$ref);
|
|
|
+ $tex = str_replace($oldref,$ref,$tex);
|
|
|
+ }
|
|
|
+ // cite citeA citeauthor etc
|
|
|
+ $cites = [];
|
|
|
+ preg_match_all("/\\\([a-z]*cite[a-z]*)\s*\{\s*[^}]+\}/i",$tex,$cites);
|
|
|
+ foreach ($cites[0] as $cite)
|
|
|
+ {
|
|
|
+ $oldcite = $cite;
|
|
|
+ $cite = preg_replace("/([{,])\s*((?!$d)[^,}]+[},])/i",'${1}'.$d.':${2}',$cite);
|
|
|
+ $cite = preg_replace("/([{,])\s*((?!$d)[^,}]+[},])/i",'${1}'.$d.':${2}',$cite);
|
|
|
+ $tex = str_replace($oldcite,$cite,$tex);
|
|
|
+ }
|
|
|
+ file_put_contents($file,$tex);
|
|
|
+ }
|
|
|
+ }
|
|
|
+ }
|
|
|
+ return $bibresources;
|
|
|
+ }
|
|
|
+ function handle_appendix($tex)
|
|
|
+ {
|
|
|
+ $appendix = false;
|
|
|
+ $lines = explode("\n",$tex);
|
|
|
+ for ($i = 0; $i < count($lines); $i++)
|
|
|
+ {
|
|
|
+ if ($appendix)
|
|
|
+ {
|
|
|
+ $lines[$i] = str_replace(['\subsubsection','\subsection','\section'],['\paragraph','\subsubsection','\subsection'],$lines[$i]);
|
|
|
+ }
|
|
|
+ if (str_starts_with($lines[$i],'\appendices') || str_starts_with($lines[$i],'\appendix'))
|
|
|
+ {
|
|
|
+ $lines[$i] = '\section{Appendix}';
|
|
|
+ $appendix = true;
|
|
|
+ }
|
|
|
+ }
|
|
|
+ $tex = implode("\n",$lines);
|
|
|
+ return $tex;
|
|
|
+ }
|
|
|
+ function stripformatting($tex)
|
|
|
+ {
|
|
|
+ return str_ireplace(['\Large ','\bf ','\rm ','\\\\'],[' ',' ',' ',' '],$tex);
|
|
|
+ }
|
|
|
+ function getusepackages($tex)
|
|
|
+ {
|
|
|
+ $packages = [];
|
|
|
+ preg_match_all("/\n\s*(\\\\usepackage([^{}]*)(?<R>{((?:[^{}]+|(?&R))*)}))/i",$tex,$packages);
|
|
|
+ if (isset($packages[1]))
|
|
|
+ {
|
|
|
+ return [$packages[1],$packages[4]];
|
|
|
+ }
|
|
|
+ return [[],[]];
|
|
|
+ }
|
|
|
+ function getmathops($tex)
|
|
|
+ {
|
|
|
+ $mathops = [];
|
|
|
+ preg_match_all("/\n\s*(\\\\DeclareMath(Operator|Alphabet)\\*?((?<R>{((?:[^{}]+|(?&R))*)})([^{}]*)|\\\\[^\{]*)(?<P>{((?:[^{}]+|(?&P))*)})(?<Q>{((?:[^{}]+|(?&Q))*)})?(?<S>{((?:[^{}]+|(?&S))*)})?(?<T>{((?:[^{}]+|(?&T))*)})?)/i",$tex,$mathops);
|
|
|
+ if (isset($mathops[4]))
|
|
|
+ return [$mathops[1],$mathops[3]];
|
|
|
+ return [[],[]];
|
|
|
+ }
|
|
|
+ function gettikzlibs($tex)
|
|
|
+ {
|
|
|
+ preg_match_all("/\\\\usetikzlibrary\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex,$matches);
|
|
|
+ if (isset($matches[2]))
|
|
|
+ return [$matches[0],$matches[2]];
|
|
|
+ else
|
|
|
+ return [[],[]];
|
|
|
+ }
|
|
|
+ function flatten($d,$f)
|
|
|
+ {
|
|
|
+ global $kpsefiles;
|
|
|
+ $tex = file_get_and_backup("$d/$f",".interm_bak");
|
|
|
+ preg_match_all("/\\n([^%]*?)(\\\\(input|include|usepackage)\s*\\\\*?\s*(?<R>{(?<RR>((?:[^{}]+|(?&R))*))}))/i",$tex,$inputs);
|
|
|
+ $files = [];
|
|
|
+ global $ignore_packages;
|
|
|
+ if (count($inputs) > 0)
|
|
|
+ {
|
|
|
+ for ($i = 0; $i < count($inputs[0]); $i++)
|
|
|
+ {
|
|
|
+ $exts = ['.tex'];
|
|
|
+ $f2 = $inputs['RR'][$i];
|
|
|
+ if (strtolower($inputs[3][$i]) === 'usepackage')
|
|
|
+ {
|
|
|
+ if (strpos($f2,",") !== false || in_array($f2,$ignore_packages) || in_array("$f2.sty",$kpsefiles))
|
|
|
+ continue;
|
|
|
+ $f2 .= ".sty";
|
|
|
+ }
|
|
|
+ while (!file_exists("$d/$f2") && count($exts) > 0)
|
|
|
+ $f2 = $inputs['RR'][$i].array_shift($exts);
|
|
|
+ if (file_exists("$d/$f2"))
|
|
|
+ $files[] = [$d,$f2,$inputs[2][$i]];
|
|
|
+ }
|
|
|
+ }
|
|
|
+ preg_match_all("/\\n([^%]*?)(\\\\(import|subimport)\s*\\\\*?\s*(?<R>{(?<RR>((?:[^{}]+|(?&R))*))})\s*(?<Q>{(?<QQ>((?:[^{}]+|(?&Q))*))}))/i",$tex,$inputs);
|
|
|
+ if (count($inputs) > 0)
|
|
|
+ {
|
|
|
+ for ($i = 0; $i < count($inputs[0]); $i++)
|
|
|
+ {
|
|
|
+ $exts = ['.tex'];
|
|
|
+ $f2 = $inputs['QQ'][$i].'/'.$inputs['RR'][$i];
|
|
|
+ while (!file_exists("$d/$f2") && count($exts) > 0)
|
|
|
+ $f2 = $inputs['QQ'][$i].'/'.$inputs['RR'][$i].array_shift($exts);
|
|
|
+ if (!file_exists("$d/$f2"))
|
|
|
+ $files[] = [$d,$f2,$inputs[2][$i]];
|
|
|
+ }
|
|
|
+ }
|
|
|
+ foreach ($files as $file)
|
|
|
+ {
|
|
|
+ $content = flatten($file[0],$file[1]);
|
|
|
+ $tex = str_replace($file[2],$content,$tex);
|
|
|
+ }
|
|
|
+ file_put_contents("$d/$f",$tex);
|
|
|
+ return $tex;
|
|
|
+ }
|
|
|
+ function adjust_papers($papers)
|
|
|
+ {
|
|
|
+ $tex = "";
|
|
|
+ $paper_fulltitle = "";
|
|
|
+ $authors = "";
|
|
|
+ $institute = "";
|
|
|
+ $header = "";
|
|
|
+ foreach ($papers as $d => $f)
|
|
|
+ {
|
|
|
+ if (str_ends_with($f,".pdf"))
|
|
|
+ {
|
|
|
+ $paper_fulltitle = trim(user_prompt("Please enter the full title for the paper in folder '$d'","TODO"));
|
|
|
+ $paper_shorttitle = trim(user_prompt("Please enter a short title for the paper in folder '$d'","TODO"));
|
|
|
+ $authors = trim(user_prompt("Please enter the author list for paper '$d'","TODO"));
|
|
|
+ $header=<<<END
|
|
|
+\chapter[$paper_shorttitle]{{$paper_fulltitle}}\label{chapter:$d}
|
|
|
+\section*{Publication Data}
|
|
|
+\\fullcite{TODO}
|
|
|
+
|
|
|
+\section*{Contributions}
|
|
|
+TODO
|
|
|
+
|
|
|
+\includepdf[pages=-]{{$d}/{$f}}
|
|
|
+END;
|
|
|
+file_put_contents("$d/main.tex",$header);
|
|
|
+ continue;
|
|
|
+ }
|
|
|
+ $file = "$d/$f";
|
|
|
+ $authors = "";
|
|
|
+ $institute = "";
|
|
|
+ $title = "";
|
|
|
+ $paper_fulltitle = "";
|
|
|
+ $paper_shorttitle = "";
|
|
|
+ $tex = file_get_and_backup($file,".interm_bak");
|
|
|
+ if ($authors == "" && preg_match("/\n\s*\\\\author\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex) == 1)
|
|
|
+ {
|
|
|
+ preg_match_all("/\n\s*\\\\author\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex,$authors);
|
|
|
+ if (isset($authors[2]))
|
|
|
+ $authors = trim(stripformatting(implode(" ",$authors[2])));
|
|
|
+ }
|
|
|
+ if ($institute == "" && preg_match("/\n\s*\\\\institute\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex) == 1)
|
|
|
+ {
|
|
|
+ preg_match_all("/\n\s*\\\\institute\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex,$institute);
|
|
|
+ if (isset($institute[2]) && isset($institute[2][0]))
|
|
|
+ $institute = trim(stripformatting($institute[2][0]));
|
|
|
+ }
|
|
|
+ if ($paper_shorttitle == "" && preg_match("/\n\s*\\\\title\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex) == 1)
|
|
|
+ {
|
|
|
+ preg_match_all("/\n\s*\\\\title\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",$tex,$title);
|
|
|
+ if (isset($title[2]) && isset($title[2][0]))
|
|
|
+ $title = trim(stripformatting($title[2][0]));
|
|
|
+ else
|
|
|
+ $title = $d;
|
|
|
+
|
|
|
+ $shorttitle = $title;
|
|
|
+ if (strpos($title,":") !== false)
|
|
|
+ $shorttitle = trim(explode(":",$title)[0]);
|
|
|
+ $paper_fulltitle = trim(user_prompt("Please enter the full title for the paper in folder '$d'","$title"));
|
|
|
+ $paper_shorttitle = trim(user_prompt("Please enter a short title for the paper in folder '$d'","$shorttitle"));
|
|
|
+ }
|
|
|
+ if ($paper_fulltitle != "" && $paper_shorttitle != "" && $authors != "")
|
|
|
+ {
|
|
|
+ $header=<<<END
|
|
|
+\chapter[$paper_shorttitle]{{$paper_fulltitle}}\label{chapter:$d}
|
|
|
+\section*{Publication Data}
|
|
|
+\\fullcite{TODO}
|
|
|
+
|
|
|
+\section*{Contributions}
|
|
|
+TODO
|
|
|
+
|
|
|
+
|
|
|
+\\newpage
|
|
|
+\begin{center}
|
|
|
+{\Large \bfseries
|
|
|
+
|
|
|
+$paper_fulltitle
|
|
|
+}\\vspace{0.6cm}
|
|
|
+{\large $authors%
|
|
|
+} % TODO: check author list
|
|
|
+{\large $institute%
|
|
|
+} % TODO: check institutes
|
|
|
+\\end{center}
|
|
|
+END;
|
|
|
+ }
|
|
|
+
|
|
|
+ [$mathopsfull,$mathops] = getmathops($tex);
|
|
|
+ global $existing_mathops;
|
|
|
+ global $preamble;
|
|
|
+ $addmathops = array_diff($mathops,$existing_mathops);
|
|
|
+ $existing_mathops = array_unique($existing_mathops);
|
|
|
+ $addmathops = array_unique($addmathops);
|
|
|
+ foreach ($addmathops as $k => $v)
|
|
|
+ {
|
|
|
+ $preamble .= $mathopsfull[$k] . "\n";
|
|
|
+ $existing_mathops[] = $v;
|
|
|
+ }
|
|
|
+
|
|
|
+ global $tikzlibs;
|
|
|
+ [$foundlibsfull,$foundlibs] = gettikzlibs($tex);
|
|
|
+ $addlibs = array_diff($foundlibs,$tikzlibs);
|
|
|
+ $tikzlibs = array_unique($tikzlibs);
|
|
|
+ $addlibs = array_unique($addlibs);
|
|
|
+ foreach ($addlibs as $k => $v)
|
|
|
+ {
|
|
|
+ $preamble .= $foundlibsfull[$k] . "\n";
|
|
|
+ $tikzlibs[] = $v;
|
|
|
+ }
|
|
|
+
|
|
|
+
|
|
|
+ $tex = preg_replace("/\\\documentclass.*\\n/i","
|
|
|
+",$tex);
|
|
|
+ if (preg_match("/\\\begin{document}/i",$tex) == 1)
|
|
|
+ {
|
|
|
+ $tex = preg_replace("/\\\begin{document}/i",$header,$tex);
|
|
|
+ $header = "";
|
|
|
+ }
|
|
|
+ $tex = preg_replace("/\\\begin{abstract}/i",'\section*{Abstract}',$tex);
|
|
|
+ $tex = preg_replace("/\\\\newcommand/i",'\declarecommand',$tex);
|
|
|
+ $tex = preg_replace("/\\\\renewcommand/i",'\declarecommand',$tex);
|
|
|
+ $tex = preg_replace("/\\\\DeclareRobustCommand\s*(?<R>{((?:[^{}]+|(?&R))*)})\s*(?<Q>{((?:[^{}]+|(?&Q))*)})/i",'',$tex);
|
|
|
+ $tex = preg_replace("/\\\\newenvironment/i",'\declareenvironment',$tex);
|
|
|
+ $tex = preg_replace("/\\\\renewenvironment/i",'\declareenvironment',$tex);
|
|
|
+ $tex = preg_replace("/\\\\NewDocumentEnvironment/i",'\DeclareDocumentEnvironment',$tex);
|
|
|
+ $tex = preg_replace("/\\\\ReNewDocumentEnvironment/i",'\DeclareDocumentEnvironment',$tex);
|
|
|
+ $tex = preg_replace("/\\\\end{abstract}/i",'',$tex);
|
|
|
+ $tex = preg_replace("/\\\\onecolumn/i",'',$tex);
|
|
|
+ $tex = preg_replace("/\\\\pagenumbering\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\special\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\DeclareMathOperator/i",'%$0',$tex);
|
|
|
+ $tex = preg_replace("/\\\\DeclareMathAlphabet/i",'%$0',$tex);
|
|
|
+ $tex = preg_replace("/\\\\usepackage[cache=false]{minted}/i",'\usepackage{minted}',$tex);
|
|
|
+ $tex = preg_replace("/\\\\thispagestyle{empty}/i",'%$0',$tex);
|
|
|
+ $tex = preg_replace("/\\\\PassOptionsToPackage\s*(?<R>{((?:[^{}]+|(?&R))*)})(?<Q>{((?:[^{}]+|(?&Q))*)})/i",'',$tex);
|
|
|
+ $tex = preg_replace("/(\\\\csvautobooktabular\s*([^{}]*)\s*)(?<R>{((?:[^{}]+|(?&R))*)})/i","\\1{{$d}/\\4}",$tex);
|
|
|
+ $tex = preg_replace("/\\\\bibliographystyle\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",'%$0',$tex);
|
|
|
+ $tex = preg_replace("/\\\\usetikzlibrary\s*(?<R>{((?:[^{}]+|(?&R))*)})/i",'%$0',$tex);
|
|
|
+ $tex = preg_replace("/\\\\DeclareFloatFont\s*(?<R>{((?:[^{}]+|(?&R))*)})(?<Q>{((?:[^{}]+|(?&Q))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\captionsetup\s*(?<R>\[((?:[^\[\]]+|(?&R))*)\])?(?<Q>{((?:[^{}]+|(?&Q))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\RequirePackage\s*(?<R>\[((?:[^\[\]]+|(?&R))*)\])?(?<Q>{((?:[^{}]+|(?&Q))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\tikzexternalize\s*(?<R>\[((?:[^\[\]]+|(?&R))*)\])/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\floatsetup\s*(?<R>\[((?:[^\[\]]+|(?&R))*)\])(?<Q>{((?:[^{}]+|(?&Q))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\newfloat\s*(?<R>{((?:[^{}]+|(?&R))*)})(?<Q>{((?:[^{}]+|(?&Q))*)})(?<P>{((?:[^{}]+|(?&P))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\s*\\\\bibliography\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","\n".'\begin{sloppypar}
|
|
|
+\printbibliography[title={References}, heading=subbibliography]
|
|
|
+\end{sloppypar}',$tex);
|
|
|
+ $tex = preg_replace("/\\\\end{document}/i",'',$tex);
|
|
|
+ $tex = preg_replace("/\n\s*\\\\author\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\tag\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\n\s*\\\\authorrunning\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\n\s*\\\\institute\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\n\s*\\\\title\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\n\s*\\\\date\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\includegraphics\s*(?<R>\[((?:[^\[\]]+|(?&R))*)\])(?<Q>{((?:[^{}]+|(?&Q))*)})/i",'\includegraphics${1}{'.$d.'/${4}}',$tex);
|
|
|
+ if (preg_match("/\\\\maketitle/i",$tex) == 1)
|
|
|
+ {
|
|
|
+ $tex = preg_replace("/\\\\maketitle/i",$header,$tex);
|
|
|
+ $header = "";
|
|
|
+ }
|
|
|
+ $tex = preg_replace("/\\\\IEEEoverridecommandlockouts/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\IEEEauthorblock[AN]/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\IEEEauthorrefmark/i","\\textsuperscript",$tex);
|
|
|
+ $tex = preg_replace("/\\\\twocolumn/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\SetWatermarkText\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\ProvidesPackage\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\SetWatermarkScale\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\\\\SetWatermarkLightness\s*(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/\n\s*\\\\tikzexternalize/i","",$tex);
|
|
|
+ [$ups,$ps] = getusepackages($tex);
|
|
|
+ global $ignore_packages;
|
|
|
+ global $included_usepackages;
|
|
|
+ global $additional_usepackages;
|
|
|
+ foreach (array_diff($ps,$included_usepackages) as $k => $v) {
|
|
|
+ if (in_array($v,['minted']))
|
|
|
+ {
|
|
|
+ $additional_usepackages[] = "\usepackage{minted}";
|
|
|
+ $included_usepackages[] = $v;
|
|
|
+ }
|
|
|
+ else if (!in_array($v,$ignore_packages) && !($v == 'floatrow' && in_array('float',$included_usepackages)))
|
|
|
+ {
|
|
|
+ $additional_usepackages[] = $ups[$k];
|
|
|
+ $included_usepackages[] = $v;
|
|
|
+ }
|
|
|
+ }
|
|
|
+ array_unique($additional_usepackages);
|
|
|
+ $tex = preg_replace("/\n\s*\\\\usepackage([^{}]*)(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+ $tex = preg_replace("/^\s*\\\\usepackage([^{}]*)(?<R>{((?:[^{}]+|(?&R))*)})/i","",$tex);
|
|
|
+
|
|
|
+ $tex = preg_replace("/\n\s*\\\\setlength{\s*\\\marginparwidth.*\n/i","\n",$tex);
|
|
|
+
|
|
|
+ if (stripos($tex,"\appendices") !== false || stripos($tex,"\appendix") !== false)
|
|
|
+ $tex = handle_appendix($tex);
|
|
|
+ if (!str_starts_with($tex,"\\makeatletter\n\def\\relativepath{\\import@path}\n\\makeatother\n"))
|
|
|
+ $tex = "\\makeatletter\n\def\\relativepath{\\import@path}\n\\makeatother\n" . $tex;
|
|
|
+ $tex .= "\n\graphicspath{}";
|
|
|
+ file_put_contents($file,$tex);
|
|
|
+ }
|
|
|
+ return;
|
|
|
+ }
|
|
|
+ function check_options($argv)
|
|
|
+ {
|
|
|
+ global $options;
|
|
|
+ $rest = [];
|
|
|
+ array_shift($argv);
|
|
|
+ foreach ($argv as $a)
|
|
|
+ {
|
|
|
+ if (str_starts_with($a,"-"))
|
|
|
+ $options[$a] = 1;
|
|
|
+ else
|
|
|
+ $rest[] = $a;
|
|
|
+ }
|
|
|
+ if (isset($options["-n"]) && !isset($options["--force-overwrite"]))
|
|
|
+ $options["--no-overwrite"] = 1;
|
|
|
+ return $rest;
|
|
|
+ }
|
|
|
+ function compile_check($papers,$precopy = false)
|
|
|
+ {
|
|
|
+ if ($precopy)
|
|
|
+ $papers = array_combine($papers,$papers);
|
|
|
+ foreach ($papers as $p => $f)
|
|
|
+ {
|
|
|
+ if (str_ends_with($f,".pdf"))
|
|
|
+ {
|
|
|
+ echo "======= Skipping PDF: $f =======\n";
|
|
|
+ continue;
|
|
|
+ }
|
|
|
+ echo "======= Paper $p -> $f START =======\n";
|
|
|
+ if ($precopy)
|
|
|
+ {
|
|
|
+ echo "$p\n";
|
|
|
+ if (strpos($p,"/") === false || str_starts_with($p,".") || !is_dir(dirname($p)))
|
|
|
+ continue;
|
|
|
+ $f = basename($p);
|
|
|
+ $p = dirname($p);
|
|
|
+ }
|
|
|
+ else
|
|
|
+ {
|
|
|
+ shell_exec("cd $p; latexmk -c 2>/dev/null; latexmk -C 2>/dev/null; rm -f *.bbl");
|
|
|
+ }
|
|
|
+ $str = shell_exec("cd $p; latexmk -latexoption=\"-file-line-error -shell-escape -interaction=nonstopmode\" -g -pdf $f 2>&1");
|
|
|
+ $lines = explode("\n",$str);
|
|
|
+ $skip = true;
|
|
|
+ $failed = false;
|
|
|
+ foreach($lines as $l)
|
|
|
+ {
|
|
|
+ if (str_starts_with($l,"Latexmk: ====List of undefined refs and citations:"))
|
|
|
+ $skip = false;
|
|
|
+ if ($skip)
|
|
|
+ continue;
|
|
|
+ if (stripos($l,"fail") !== false)
|
|
|
+ $failed = true;
|
|
|
+ echo "$l\n";
|
|
|
+ }
|
|
|
+ if ($failed || user_consent("Please check the PDF file. Are there any problems with invalid references to figures, tables or with the bibliography?","--","--no-overwrite"))
|
|
|
+ error_exit("The paper did not compile properly, please fix the errors next before continuing.");
|
|
|
+ echo "======= Paper $p -> $f END =======\n";
|
|
|
+ }
|
|
|
+ }
|
|
|
+ function init_kpse()
|
|
|
+ {
|
|
|
+ global $kpsefiles;
|
|
|
+ $kpsepath = shell_exec("kpsepath tex");
|
|
|
+ $kpsepath = explode(":",$kpsepath);
|
|
|
+ foreach ($kpsepath as $k)
|
|
|
+ {
|
|
|
+ $k = str_replace(["!!","\n","///","//"],["","","/","/"],$k);
|
|
|
+ if (str_starts_with($k,"."))
|
|
|
+ continue;
|
|
|
+ $found = null;
|
|
|
+ if (is_dir($k))
|
|
|
+ $found = rscandir($k,[".sty"]);
|
|
|
+ if ($found != null)
|
|
|
+ {
|
|
|
+ for ($i = 0; $i < count($found); $i++)
|
|
|
+ $found[$i] = basename($found[$i]);
|
|
|
+ $kpsefiles = array_unique(array_merge($kpsefiles,$found));
|
|
|
+ }
|
|
|
+ }
|
|
|
+ sort($kpsefiles);
|
|
|
+ }
|
|
|
+ echo "\n=== Step 1/$steps: Check Software and Command Line Options ===\n\n";
|
|
|
+ check_software();
|
|
|
+ $argv = check_options($argv);
|
|
|
+ if (isset($options["--help"]))
|
|
|
+ print_help();
|
|
|
+
|
|
|
+ $sloppy_begin = "";
|
|
|
+ $sloppy_end = "";
|
|
|
+ if (!isset($options["--no-sloppy"]))
|
|
|
+ {
|
|
|
+ $sloppy_begin = '\begin{sloppypar}';
|
|
|
+ $sloppy_end = '\end{sloppypar}';
|
|
|
+ }
|
|
|
+
|
|
|
+ echo "\n=== Step 2/$steps: Check Folders ===\n\n";
|
|
|
+ [$targets,$texfiles,$sourcedirs] = check_folders($argv);
|
|
|
+
|
|
|
+ echo "\n=== Step 3/$steps: Pre-Copy Compile Check ===\n\n";
|
|
|
+ $targets_exist = true;
|
|
|
+ foreach ($targets as $t)
|
|
|
+ if (!is_dir($t))
|
|
|
+ $targets_exist = false;
|
|
|
+ if (isset($options["--no-compile-check"]) || $targets_exist)
|
|
|
+ echo "Skipping...\n";
|
|
|
+ else
|
|
|
+ compile_check($argv,true);
|
|
|
+ echo "\n=== Step 4/$steps: Copying Files ===\n\n";
|
|
|
+ $papers = check_and_copy_folders($argv);
|
|
|
+ echo "\n=== Step 5/$steps: Adjusting References (in *.bib *.tex *.tikz) ===\n\n";
|
|
|
+ $bibresources = adjust_references($papers,[".bib",".tex",".tikz"]);
|
|
|
+ echo "\n=== Step 6/$steps: Post-Copy Compile Check ===\n\n";
|
|
|
+ if (isset($options["--no-compile-check"]))
|
|
|
+ echo "Skipping...\n";
|
|
|
+ else
|
|
|
+ compile_check($papers);
|
|
|
+ echo "\n=== Step 7/$steps: Initialize KPSE Database ===\n\n";
|
|
|
+ init_kpse();
|
|
|
+ global $ignore_packages;
|
|
|
+ $ignore_packages = explode(",",user_prompt("Enter a comma-separated list of packages that should be considered ignored (e.g. publisher or conference styles, as well as packages that modify font or page formats)","usenix,epsfig,endnotes,flushend,mathptmx,pslatex,fontenc,microtype,draftwatermark,usenixbadges,cite,csvenhanced,etex,filecontents"));
|
|
|
+ echo "\n=== Step 8/$steps: Flattening Papers ===\n\n";
|
|
|
+ foreach ($papers as $d => $f)
|
|
|
+ flatten($d,$f);
|
|
|
+ echo "\n=== Step 9/$steps: Post-Flattening Compile Check ===\n\n";
|
|
|
+ if (isset($options["--no-compile-check"]))
|
|
|
+ echo "Skipping...\n";
|
|
|
+ else
|
|
|
+ compile_check($papers);
|
|
|
+ echo "\n=== Step 10/$steps: Preparing Extraction of Used Packages, Tikz Libs, Math Ops etc. ===\n\n";
|
|
|
+ [$_t,$usepackages1] = getusepackages(file_get_contents("main.tex.php"));
|
|
|
+ [$_t,$usepackages2] = getusepackages(file_get_contents("tugraz_defaults.sty"));
|
|
|
+ global $included_usepackages;
|
|
|
+ $included_usepackages = array_unique(array_merge($usepackages1, $usepackages2));
|
|
|
+ sort($included_usepackages);
|
|
|
+
|
|
|
+ echo "\n=== Step 12/$steps: Adjusting Papers ===\n\n";
|
|
|
+ adjust_papers($papers);
|
|
|
+ foreach ($papers as $k => $v)
|
|
|
+ {
|
|
|
+ if (str_ends_with($papers[$k],".pdf"))
|
|
|
+ $papers[$k] = 'main.tex';
|
|
|
+ }
|
|
|
+ echo "\n=== Step 12/$steps: Generate main.tex ===\n\n";
|
|
|
+ $thesis_type = user_prompt("Enter Thesis Type ","PhD Thesis");
|
|
|
+ $thesis_title = user_prompt("Enter Thesis Title ","Security of TODO");
|
|
|
+ $thesis_part1_title = user_prompt("Enter Introductory Part Title ","Introduction to the Security of TODO");
|
|
|
+ $thesis_author = user_prompt("Enter Your Name ","Harry Potter");
|
|
|
+ $thesis_date = user_prompt("Enter Prospective Defense Month", "July 1998");
|
|
|
+ $thesis_institute = user_prompt("Enter Your Institute","Institute for Applied Information Processing and Communications");
|
|
|
+ $thesis_assessors = user_prompt("Enter Names of your Assessors (comma-separated)","Severus Snape, Minerva McGonagall");
|
|
|
+ $num_publications_in_thesis = count($papers);
|
|
|
+ $num_publications = user_prompt("How many publications did you co-author during your PhD? (6 is the absolute minimum for a cumulative thesis)","6");
|
|
|
+
|
|
|
+ ob_start();
|
|
|
+ require "main.tex.php";
|
|
|
+ $maintex_content = ob_get_contents();
|
|
|
+ ob_end_clean();
|
|
|
+ if (!file_exists("main.tex") || user_consent("main.tex already exists. overwrite?"))
|
|
|
+ file_put_contents("main.tex",$maintex_content);
|
|
|
+
|
|
|
+ if (!file_exists("mypreamble.sty") || user_consent("mypreamble.sty already exists... overwrite?","--force-overwrite","--no-overwrite"))
|
|
|
+ file_put_contents("mypreamble.sty","\ProvidesPackage{mypreamble}\n\n".implode("\n",array_unique($additional_usepackages))."\n\n".$preamble);
|
|
|
+
|
|
|
+ @mkdir("tikz");
|
|
|
+
|
|
|
+ if (!file_exists("abstract.tex"))
|
|
|
+ file_put_contents("abstract.tex","");
|
|
|
+ if (!file_exists("intro.tex"))
|
|
|
+ file_put_contents("intro.tex","");
|
|
|
+
|
|
|
+ if (!file_exists("main.bib"))
|
|
|
+ file_put_contents("main.bib",'@inproceedings{Kocher2019,
|
|
|
+ author = {Paul Kocher and Jann Horn and Anders Fogh and Daniel Genkin and Daniel Gruss and Werner Haas and Mike Hamburg and Moritz Lipp and Stefan Mangard and Thomas Prescher and Michael Schwarz and Yuval Yarom},
|
|
|
+ booktitle = {S\&P},
|
|
|
+ title = {{Spectre Attacks: Exploiting Speculative Execution}},
|
|
|
+ year = {2019}
|
|
|
+}');
|
|
|
+ if (isset($options["--cv"]))
|
|
|
+ {
|
|
|
+ if (!file_exists("cv.bib"))
|
|
|
+ file_put_contents("cv.bib","");
|
|
|
+ if (!file_exists("cv.tex"))
|
|
|
+ file_put_contents("cv.tex","This is my CV! Thanks for checking it out!");
|
|
|
+ }
|
|
|
+
|
|
|
+ if (!isset($options["--no-cover"]))
|
|
|
+ {
|
|
|
+ ob_start();
|
|
|
+ require "cover1.tex.php";
|
|
|
+ $covertex_content = ob_get_contents();
|
|
|
+ ob_end_clean();
|
|
|
+ if (!file_exists("cover1.tex") || user_consent("cover1.tex already exists. overwrite?"))
|
|
|
+ file_put_contents("cover1.tex",$covertex_content);
|
|
|
+
|
|
|
+ shell_exec('latexmk -latexoption="-file-line-error -shell-escape -interaction=nonstopmode" -g -pdf cover1.tex 1>/dev/null 2>/dev/null');
|
|
|
+
|
|
|
+ ob_start();
|
|
|
+ require "cover2.tex.php";
|
|
|
+ $covertex_content = ob_get_contents();
|
|
|
+ ob_end_clean();
|
|
|
+ if (!file_exists("cover2.tex") || user_consent("cover2.tex already exists. overwrite?"))
|
|
|
+ file_put_contents("cover2.tex",$covertex_content);
|
|
|
+
|
|
|
+ shell_exec('latexmk -latexoption="-file-line-error -shell-escape -interaction=nonstopmode" -g -pdf cover2.tex 1>/dev/null 2>/dev/null');
|
|
|
+ }
|
|
|
+ if (isset($options["--compile"]))
|
|
|
+ {
|
|
|
+ passthru('latexmk -latexoption="-file-line-error -shell-escape" -g -pdf main.tex');
|
|
|
+ }
|
|
|
+ else
|
|
|
+ {
|
|
|
+ echo "=== done ===\nNext step, run this command:\nlatexmk -latexoption=\"-shell-escape\" -g -pdf main.tex\n";
|
|
|
+ }
|
|
|
?>
|
Daniel Gruss